課程名稱 |
化學資訊 Cheminformatics |
開課學期 |
105-1 |
授課對象 |
電機資訊學院 資訊工程學研究所 |
授課教師 |
曾宇鳳 |
課號 |
CSIE5730 |
課程識別碼 |
922EU3500 |
班次 |
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學分 |
3 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期三7,8,9(14:20~17:20) |
上課地點 |
資111 |
備註 |
本課程以英語授課。 總人數上限:50人 |
課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
The new discipline of cheminformatics covers the application of computer-
assisted methods to chemical problems such as information storage and
retrieval, the prediction of physical, chemical or biological properties of
compounds, spectra simulation, structure elucidation, reaction modeling,
synthesis planning and drug design. This class provides an introduction to the
representation of molecular structures and reactions, data types and
databases/data sources, search methods, methods for data analysis as well as
such applications as structure elucidation, reaction simulation, synthesis
planning and drug design.
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課程目標 |
* Basic chemistry for cheminformatics, representation of the chemical
structure, chemical nomenclature, elements, and formulas of compounds to
chemical structure fingerprints
* Chemical data, from 2D to 3D structure, structure comparison
* Chemical reactions,
* Calculation of physical chemical properties of compounds,
* Calculation of structure descriptors
* Methods for data analysis, and applications in computer-aided drug design,
spectra analysis, molecular modeling, simulation |
課程要求 |
Basic chemistry and physics background preferred but not required. Experience
in machine learning, multivariate statistical analysis, and pattern
recognition will be helpful but not required.
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預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
Textbook: Cheminformatics, by Johann Gasteiger, Thomas Engel
Publisher: John Wiley & Sons (December 9, 2003) , ISBN-10: 3527306811 |
參考書目 |
Handbook of Chemoinformatics
Johann Gasteiger, WILEY-VCH, 3527306803 |
評量方式 (僅供參考) |
No. |
項目 |
百分比 |
說明 |
1. |
Final Projects |
30% |
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2. |
Attendance |
10% |
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3. |
Second Midterm Exam |
30% |
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4. |
First Midterm Exam |
30% |
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週次 |
日期 |
單元主題 |
第1週 |
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Introduction |
第2週 |
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Representation of Chemical Compounds and Graph theory I |
第3週 |
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2D Descriptors and 3D Descriptors Calculation |
第4週 |
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Chemical Similarity and Diversity |
第5週 |
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Substructure Searching |
第6週 |
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Database and Data Source I |
第7週 |
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First Midterm Exam |
第8週 |
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Database and Data Source II |
第9週 |
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Final Projects Proposal 1 |
第10週 |
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Methods for Data Analysis |
第11週 |
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Molecular Modeling 1 |
第12週 |
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Molecular Modeling 2 |
第13週 |
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QSAR |
第14週 |
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QSAR |
第15週 |
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Second Midterm Exam
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第16週 |
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Final Projects Proposal 2 |
第17週 |
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Virtual High Throughput Screening 3 |
第18週 |
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Final Projects |
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