課程名稱 |
化學資訊 CHEMINFORMATICS |
開課學期 |
96-2 |
授課對象 |
電機資訊學院 生醫電子與資訊學研究所 |
授課教師 |
曾宇鳳 |
課號 |
CSIE5730 |
課程識別碼 |
922EU3500 |
班次 |
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學分 |
3 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期四2,3,4(9:10~12:10) |
上課地點 |
資310 |
備註 |
本課程以英語授課。本課程以英語授課。本課程以英語授課。本課程以英 總人數上限:30人 |
Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/962cheminfo |
課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
The new discipline of cheminformatics covers the application of computer-
assisted methods to chemical problems such as information storage and
retrieval, the prediction of physical, chemical or biological properties of
compounds, spectra simulation, structure elucidation, reaction modeling,
synthesis planning and drug design. This class provides an introduction to the
representation of molecular structures and reactions, data types and
databases/data sources, search methods, methods for data analysis as well as
such applications as structure elucidation, reaction simulation, synthesis
planning and drug design.
Basic chemistry and physics background preferred but not required. Experience
in machine learning, multivariate statistical analysis, and pattern
recognition will be helpful but not required.
Textbook: Cheminformatics, by Johann Gasteiger, Thomas Engel
Publisher: John Wiley & Sons (December 9, 2003) , ISBN-10: 3527306811
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課程目標 |
* Basic chemistry for cheminformatics, representation of the chemical
structure, chemical nomenclature, elements, and formulas of compounds to
chemical structure fingerprints
* Chemical data, from 2D to 3D structure, structure comparison
* Chemical reactions,
* Calculation of physical chemical properties of compounds,
* Calculation of structure descriptors
* Methods for data analysis, and applications in computer-aided drug design,
spectra analysis, molecular modeling, simulation
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課程要求 |
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預期每週課後學習時數 |
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Office Hours |
每週四 15:00~17:00 |
指定閱讀 |
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參考書目 |
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評量方式 (僅供參考) |
No. |
項目 |
百分比 |
說明 |
1. |
期中考 |
30% |
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2. |
期末考 |
30% |
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3. |
作業 |
20% |
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4. |
報告 |
0% |
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5. |
出席 |
20% |
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週次 |
日期 |
單元主題 |
第1週 |
2/21 |
Searching Chemical structures |
第2週 |
2/28 |
228和平紀念日 |
第3週 |
3/06 |
Representation of Chemical Compounds |
第4週 |
3/13 |
暫停一次 |
第5週 |
3/20 |
Representation of Chemical Structures and Graph theory |
第6週 |
3/27 |
Representation of Chemical Compounds 3 |
第7週 |
4/03 |
Stereochemistry、Fragment、3D to surface |
第8週 |
4/10 |
Mid Term |
第9週 |
4/17 |
Database and Data Source |
第10週 |
4/24 |
Database and Data Source 2 |
第11週 |
5/01 |
Searching Chemical Structures |
第12週 |
5/08 |
Calculation of Physical and Chemical Data |
第13週 |
5/15 |
Calculation of Physical and Chemical Data 2 |
第14週 |
5/22 |
More on Molecular Dynamic Simulation |
第15週 |
5/29 |
Calculation of Structure Descriptors 1 |
第16週 |
6/05 |
Lipinski rule of five & Calculation of Structure Descriptors 2 |
第17週 |
6/12 |
Methods for Data Analysis & Applications |
第18週 |
6/19 |
Final Exam |
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