課程名稱 |
化學資訊 CHEMINFORMATICS |
開課學期 |
98-2 |
授課對象 |
學程 能源科技學程 |
授課教師 |
曾宇鳳 |
課號 |
CSIE5730 |
課程識別碼 |
922EU3500 |
班次 |
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學分 |
3 |
全/半年 |
半年 |
必/選修 |
選修 |
上課時間 |
星期一2,3,4(9:10~12:10) |
上課地點 |
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備註 |
本課程以英語授課。上課地點:資工系R519 總人數上限:25人 |
Ceiba 課程網頁 |
http://ceiba.ntu.edu.tw/982Cheminfo |
課程簡介影片 |
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核心能力關聯 |
核心能力與課程規劃關聯圖 |
課程大綱
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課程概述 |
The new discipline of cheminformatics covers the application of computer-
assisted methods to chemical problems such as information storage and
retrieval, the prediction of physical, chemical or biological properties of
compounds, spectra simulation, structure elucidation, reaction modeling,
synthesis planning and drug design. This class provides an introduction to the
representation of molecular structures and reactions, data types and
databases/data sources, search methods, methods for data analysis as well as
such applications as structure elucidation, reaction simulation, synthesis
planning and drug design.
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課程目標 |
* Basic chemistry for cheminformatics, representation of the chemical
structure, chemical nomenclature, elements, and formulas of compounds to
chemical structure fingerprints
* Chemical data, from 2D to 3D structure, structure comparison
* Chemical reactions,
* Calculation of physical chemical properties of compounds,
* Calculation of structure descriptors
* Methods for data analysis, and applications in computer-aided drug design,
spectra analysis, molecular modeling, simulation |
課程要求 |
Basic chemistry and physics background preferred but not required. Experience
in machine learning, multivariate statistical analysis, and pattern
recognition will be helpful but not required.
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預期每週課後學習時數 |
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Office Hours |
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指定閱讀 |
Textbook: Cheminformatics, by Johann Gasteiger, Thomas Engel
Publisher: John Wiley & Sons (December 9, 2003) , ISBN-10: 3527306811 |
參考書目 |
Handbook of Chemoinformatics
Johann Gasteiger, WILEY-VCH, 3527306803 |
評量方式 (僅供參考) |
No. |
項目 |
百分比 |
說明 |
1. |
Mid Term |
30% |
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2. |
Final Term |
30% |
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3. |
Attendance |
20% |
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4. |
Homework |
20% |
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週次 |
日期 |
單元主題 |
第1週 |
02/22 |
Introduction |
第2週 |
03/01 |
Representation of Chemical Compounds |
第3週 |
03/08 |
Chemical Structure File Formats |
第4週 |
03/15 |
Characterizing 2D structures |
第5週 |
03/22 |
Characterizing 2D structures with descriptors and fingerprints |
第6週 |
03/29 |
3D Representation of Chemical Compounds |
第7週 |
04/05 |
清明節 |
第8週 |
04/12 |
Chemical Information Searching |
第9週 |
04/19 |
Midterm Exam |
第10週 |
04/26 |
Database and Data Source I |
第11週 |
05/03 |
Database and Data Source II & Patent Search |
第12週 |
05/10 |
Molecular Dynamics Simulation & Gromacs I |
第13週 |
05/17 |
Calculation of Physical and Chemical Data & Gromacs II |
第14週 |
05/24 |
Computer Aided Molecular Design |
第15週 |
05/31 |
Quantitative Structure-Activity Relationship (QSAR) |
第16週 |
06/07 |
Computer Aided Drug Design I |
第17週 |
06/14 |
Computer Aided Drug Design II |
第18週 |
06/21 |
Final Exam |
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