|
週次 |
日期 |
單元主題 |
|
第1週 |
02/22 |
Phylogeny in 21st century: Concept and usage of phylogeny
Practical: Primer design and PCR |
|
第2週 |
2/29 |
No class: Speciatiion (Assigned reading: Ecology's evolutionary backup) |
|
第3週 |
03/07 |
植物的生殖與傳粉：花粉管萌發試驗 Aniline Blue |
|
第4週 |
03/14 |
Check sequences: Molecular Homology, Comparing pairs of sequences (alignment basics), sequence analyzing software (bioedit) |
|
第5週 |
03/21 |
Multiple sequence alignment: Clustal W and muscle in MEGA 7 |
|
第6週 |
03/28 |
Phylogenetic analysis: distance methods, UPGMA & NJ |
|
第7週 |
04/04 |
Spring holiday midterm break |
|
第8週 |
04/11 |
Introduction to Parsimony using Phylips & Mega |
|
第9週 |
04/18 |
Parsimony seetings, optimization, Introduction to PAUP* |
|
第10週 |
04/25 |
Molecular Phylogenetics Maximum likelihood and modeltest |
|
第11週 |
05/02 |
Maximum likelihood: Models, correction, model choice; ModelTest exercise |
|
第12週 |
05/09 |
Bayesian methods, MCMC
Introduction to MrBayes and practice |
|
第14週 |
05/23 |
Molecular Divergence Dating |
|
第15週 |
05/30 |
Tree confidence, accuracy and performance |
|
第16週 |
06/06 |
Methods in plant reproductive biology：花粉活力及柱頭可孕性檢定 Pollen viability and stigma receptivity |
|
第18週 |
06/20 |
Term paper due and general discussions |
|
第4-1週 |
03/14 |
How to find gene sequences on web? (NCBI resources) sequence analyzing software (bioedit) and Entrez surfing |
|
第8-1週 |
04/11 |
實驗操作：分生組織活性檢定 (cell division by aniline blue)-堇蘭或台灣苣苔子葉 |