課程資訊
課程名稱
分子演化
Molecular Evolution 
開課學期
102-2 
授課對象
生命科學院  生態學與演化生物學研究所  
授課教師
丁照棣 
課號
EEB5048 
課程識別碼
B44 U1600 
班次
 
學分
全/半年
半年 
必/選修
選修 
上課時間
星期三3,4(10:20~12:10) 
上課地點
生科419 
備註
與胡哲明合開
總人數上限:40人 
Ceiba 課程網頁
http://ceiba.ntu.edu.tw/1022ME 
課程簡介影片
 
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課程概述

This course is designed for undergraduate level students who are interested in molecular evolution or bioinformatics related topics. Students who have some knowledge of biology and/or genetics are preferred. The instructors will introduce the dynamics of evolutionary change at the molecular level, the driving forces govern the evolutionary process, the effects of the various molecular mechanisms on the structure of genes, proteins, and genomes, the methodology involved in dealing with molecular data from an evolutionary perspective, and the logic of molecular hypothesis testing.

 

課程目標
In combination with the computer laboratory practice, we aim to help our students to understand the evolutionary processes at the molecular level. 
課程要求
 
預期每週課後學習時數
 
Office Hours
每週三 12:00~13:00 
指定閱讀
 
參考書目
Bioinformatics and Molecular Evolution by Paul Higgs and Teresa Attwood (Wiley-Blackwell, 2005)
Computational Molecular Evolution by Ziheng Yang (Oxford University Press, 2006)
Inferring Phylogenies (Paperback) by Joseph Felsenstein (Sinauer, 2003)
Molecular Evolution and Phylogenetics by Masatoshi Nei and Sudhir Kumar (Oxford University Press, 2000)
Molecular Evolution by Wen-Hsiung Li (Sinauer Associates, 1997)
Molecular Evolution: A Phylogenetic Approach by Roderick D.M. Page and, Edward C. Holmes (1991, Wiley-Blackwell)
Phylogenetic Trees Made Easy: A How-to Manual, Third Edition by Barry G. Hall (Sinauer, 2007)
Statistical Methods in Molecular Evolution by Rasmus Nielsen (Springer, 2005)
The Phylogenetic Handbook: A Practical Approach to DNA and Protein Phylogeny Ed. by Marco Salemi and Anne-Mieke Vandamme (Cambridge University Press, 2003)

 
評量方式
(僅供參考)
 
No.
項目
百分比
說明
1. 
Midterm exam 
30% 
Chau-Ti Ting 
2. 
Final exam 
30% 
Jer-Ming Hu 
3. 
Homework 
35% 
Chau-Ti Ting/Jer-Ming Hu 
4. 
Classroom performance 
5% 
Chau-Ti Ting/Jer-Ming Hu 
 
課程進度
週次
日期
單元主題
第1週
  Introduction, History of Evolutionary Biology 
第2週
  Dynamics of genes in population 
第3週
  Evolutionary changes in sequences 
第4週
  Rates and patterns of substitution 
第5週
  Rates and patterns of substitution 
第6週
  Signature of selection at the molecular level 
第7週
  Spring Break 
第8週
  Midterm examination 
第9週
  Phylogenetic inference I 
第10週
  Phylogenetic inference II 
第11週
  Laboratory practice 
第12週
  Phylogenomics 
第13週
  Horizontal gene transfer 
第14週
  Laboratory practice 
第15週
  Genomic expansion by gene duplication 
第16週
  no class 
第17週
  Holiday